geom_line in ggplot2
How to make line plots in ggplot2 with geom_line. Examples with code and interactive charts
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Basic Line Plot
library(plotly)
dat1 <- data.frame(
sex = factor(c("Female","Female","Male","Male")),
time = factor(c("Lunch","Dinner","Lunch","Dinner"), levels=c("Lunch","Dinner")),
total_bill = c(13.53, 16.81, 16.24, 17.42)
)
p <- ggplot(data=dat1, aes(x=time, y=total_bill, group=sex)) +
geom_line() +
geom_point()
fig <- ggplotly(p)
fig
Add Points
library(plotly)
dat1 <- data.frame(
sex = factor(c("Female","Female","Male","Male")),
time = factor(c("Lunch","Dinner","Lunch","Dinner"), levels=c("Lunch","Dinner")),
total_bill = c(13.53, 16.81, 16.24, 17.42)
)
# Map sex to different point shape, and use larger points
p <- ggplot(data=dat1, aes(x=time, y=total_bill, group=sex, shape=sex)) +
geom_line() +
geom_point()
fig <- ggplotly(p)
fig
Styles & Themes
library(plotly)
dat1 <- data.frame(
sex = factor(c("Female","Female","Male","Male")),
time = factor(c("Lunch","Dinner","Lunch","Dinner"), levels=c("Lunch","Dinner")),
total_bill = c(13.53, 16.81, 16.24, 17.42)
)
p <- ggplot(data=dat1, aes(x=time, y=total_bill, group=sex, shape=sex, colour=sex)) +
geom_line(aes(linetype=sex), size=1) + # Set linetype by sex
geom_point(size=5) + # Use larger points, fill with white
scale_colour_hue(name="Sex", # Set legend title
l=30) + # Use darker colors (lightness=30)
scale_shape_manual(name="Sex",
values=c(22,21)) + # Use points with a fill color
scale_linetype_discrete(name="Sex") +
xlab("Time of day") + ylab("Total bill") + # Set axis labels
ggtitle("Average bill for 2 people") + # Set title
theme_bw()
fig <- ggplotly(p)
fig
Continuous
library(plotly)
datn <- read.table(header=TRUE, text='
supp dose length
OJ 0.5 13.23
OJ 1.0 22.70
OJ 2.0 26.06
VC 0.5 7.98
VC 1.0 16.77
VC 2.0 26.14
')
p <- ggplot(data=datn, aes(x=dose, y=length, group=supp, colour=supp)) +
geom_line() +
geom_point()
fig <- ggplotly(p)
fig
Categorical
library(plotly)
datn <- read.table(header=TRUE, text='
supp dose length
OJ 0.5 13.23
OJ 1.0 22.70
OJ 2.0 26.06
VC 0.5 7.98
VC 1.0 16.77
VC 2.0 26.14
')
datn2 <- datn
datn2$dose <- factor(datn2$dose)
p <- ggplot(data=datn2, aes(x=dose, y=length, group=supp, colour=supp)) +
geom_line() +
geom_point()
fig <- ggplotly(p)
fig
Multiple Variables
library(reshape2)
library(plotly)
test_data <-
data.frame(
var0 = 100 + c(0, cumsum(runif(49, -20, 20))),
var1 = 150 + c(0, cumsum(runif(49, -10, 10))),
date = seq(as.Date("2002-01-01"), by="1 month", length.out=100)
)
test_data_long <- melt(test_data, id="date") # convert to long format
p <- ggplot(data=test_data_long,
aes(x=date, y=value, colour=variable)) +
geom_line()
fig <- ggplotly(p)
fig
Mulitple Points
library(plotly)
library(data.table)
d=data.table(x=seq(0, 100, by=0.1), y=seq(0,1000))
p <- ggplot(d, aes(x=x, y=y))+geom_line()
#Change the length parameter for fewer or more points
thinned <- floor(seq(from=1,to=dim(d)[1],length=70))
p <- ggplot(d, aes(x=x, y=y))+geom_line()+geom_point(data=d[thinned,],aes(x=x,y=y))
fig <- ggplotly(p)
fig
Styled Lines
library(plotly)
x <- c(10, 20, 50, 10, 20, 50)
mean = c(52.4, 98.2, 97.9, 74.1, 98.1, 97.6)
group = c(1, 1, 1, 2,2,2)
upper = c(13.64, 89, 86.4, 13.64, 89, 86.4)
lower = c(95.4, 99.8, 99.7, 95.4, 99.8, 99.7)
data <- data.frame(x=x,y=mean, group, upper, lower)
p <- ggplot(data, aes(x = x, y= mean, group = as.factor(data$group),
colour=as.factor(data$group))) +
geom_line() + geom_point() +
geom_line(aes(y=lower),linetype="dotted") +
geom_line(aes(y=upper),linetype="dotted")+
scale_color_manual(name="Groups",values=c("red", "blue"))+
guides(colour = guide_legend(override.aes = list(linetype = 1)))
fig <- ggplotly(p)
fig
Mapping to Groups
library(plotly)
# Data frame with two continuous variables and two factors
set.seed(0)
x <- rep(1:10, 4)
y <- c(rep(1:10, 2)+rnorm(20)/5, rep(6:15, 2) + rnorm(20)/5)
treatment <- gl(2, 20, 40, labels=letters[1:2])
replicate <- gl(2, 10, 40)
d <- data.frame(x=x, y=y, treatment=treatment, replicate=replicate)
p <- ggplot(d, aes(x=x, y=y, colour=treatment, group=interaction(treatment, replicate))) +
geom_point() + geom_line()
fig <- ggplotly(p)
fig
Add Segment
library(plotly)
x <- rep(1:10, 2)
y <- c(1:10, 1:10+5)
fac <- gl(2, 10)
df <- data.frame(x=x, y=y, fac=fac)
p <- ggplot(df, aes(x=x, y=y, linetype=fac)) +
geom_line() +
geom_segment(aes(x=2, y=7, xend=7, yend=7), colour="red") +
scale_linetype_discrete(guide=guide_legend(override.aes=aes(colour="blue")))
fig <- ggplotly(p)
fig
Add Error Bar
library(plotly)
# sample data
df <- data.frame(condition = rep(LETTERS[1:4], each = 5),
E = rep(1:5, times = 4),
avg = rnorm(20),
se = .3)
# plotting command
p <- ggplot(data = df, aes(x = E,
y = avg,
color = condition,
linetype = condition,
shape = condition,
fill = condition)) +
geom_line(size=1) +
geom_point(size=3) +
scale_color_manual(values = c(A = "red", B = "red", C = "blue", D = "blue"),
guide = "none") +
scale_linetype_manual(values = c(A = "solid", B = "dashed", C = "solid", D = "dashed"),
guide = "none") +
scale_shape_manual(values = c(A = 24, B = 24, C = 21, D = 21),
guide = "none") +
scale_fill_manual(values = c(A = "white", B = "red", C = "white", D = "blue"),
guide = "none") +
geom_errorbar(aes(x = E, ymin = avg-se, ymax = avg+se, color = NULL, linetype = NULL),
width=.1, position=position_dodge(width = .1))
fig <- ggplotly(p)
fig
What About Dash?
Dash for R is an open-source framework for building analytical applications, with no Javascript required, and it is tightly integrated with the Plotly graphing library.
Learn about how to install Dash for R at https://dashr.plot.ly/installation.
Everywhere in this page that you see fig
, you can display the same figure in a Dash for R application by passing it to the figure
argument of the Graph
component from the built-in dashCoreComponents
package like this:
library(plotly)
fig <- plot_ly()
# fig <- fig %>% add_trace( ... )
# fig <- fig %>% layout( ... )
library(dash)
library(dashCoreComponents)
library(dashHtmlComponents)
app <- Dash$new()
app$layout(
htmlDiv(
list(
dccGraph(figure=fig)
)
)
)
app$run_server(debug=TRUE, dev_tools_hot_reload=FALSE)