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geom_jitter in ggplot2

How to make a graph using geom_jitter.


New to Plotly?

Plotly is a free and open-source graphing library for R. We recommend you read our Getting Started guide for the latest installation or upgrade instructions, then move on to our Plotly Fundamentals tutorials or dive straight in to some Basic Charts tutorials.

Basic Jitter Plot

You can use the "text=" option to control what pops when you hover over each point. (Note: you might get an error message when running this function; ggplot does not recognize it but the plotly function does.)

library(plotly)
district_density <- read.csv("https://raw.githubusercontent.com/plotly/datasets/master/district_density.csv",
                             stringsAsFactors = FALSE)
district_density$cluster <- factor(district_density$cluster, levels=c("Pure urban", "Urban-suburban mix", "Dense suburban", "Sparse suburban", "Rural-suburban mix", "Pure rural"))
district_density$region <- factor(district_density$region, levels=c("West", "South", "Midwest", "Northeast"))

p <- ggplot(district_density,aes(x=cluster, y=dem_margin, colour=region)) +
  geom_jitter(aes(text=paste("district: ", cd_code)), width=0.25, alpha=0.5, ) +
  geom_hline(yintercept=0) +
  theme(axis.text.x = element_text(angle = -30, hjust = 0.1)) +
  labs(title = "Democratic performance in the 2018 House elections, by region and density",
       x = "Density Index from CityLab",
       y = "Democratic Margin of Victory/Defeat")
fig <- ggplotly(p)

fig

Add Boxplot

library(plotly)

p <- ggplot(district_density,aes(x=cluster, y=dem_margin)) +
  geom_boxplot(fill=NA, alpha=0.5) +
  geom_jitter(aes(colour=region, text=paste("district: ", cd_code)), width=0.25, alpha=0.5) +
  geom_hline(yintercept=0) +
  theme(axis.text.x = element_text(angle = -30, hjust = 0.1)) +
  labs(title = "Democratic performance in the 2018 House elections, by region and density",
       x = "Density Index from CityLab",
       y = "Democratic Margin of Victory/Defeat")
fig <- ggplotly(p)

fig

Facetting

library(plotly)

p <- ggplot(district_density,aes(x=region, y=dem_margin, colour=region)) +
  geom_jitter(aes(text=paste("district: ", cd_code)), width=0.25, alpha=0.5, ) +
  geom_hline(yintercept=0) +
  facet_grid(.~cluster) +
  theme(axis.text.x = element_text(angle = -30, hjust = 0.1)) +
  labs(title = "Democratic performance in the 2018 House elections, by region and density",
       x = "Density Index from CityLab",
       y = "Democratic Margin of Victory/Defeat")
fig <- ggplotly(p)

fig

Adding Text

Tabulating the number of observations in each category, and adding these numbers to the graph.

library(plotly)
library(dplyr)

density_sum <- district_density %>%
  group_by(cluster, region) %>%
  dplyr::summarise(count = n())

p <- ggplot(district_density,aes(x=region, y=dem_margin, colour=region)) +
  geom_jitter(aes(text=paste("district: ", cd_code)), width=0.25, alpha=0.5, ) +
  geom_hline(yintercept=0) +
  facet_grid(.~cluster) +
  theme(axis.text.x = element_text(angle = -30, hjust = 0.1)) +
  geom_text(data = density_sum, aes(label = count,
                                    x = region, y = -90)) +
  labs(title = "Democratic performance in the 2018 House elections, by region and density",
       x = "Density Index from CityLab",
       y = "Democratic Margin of Victory/Defeat")
fig <- ggplotly(p)

fig

Customized Appearance

Centre the title, add colours to the facet label, rotate the labels, change the font, and remove the unnecessary legend.

library(plotly)

p <- ggplot(district_density,aes(x=region, y=dem_margin, colour=region)) +
  geom_jitter(aes(text=paste("district: ", cd_code)), width=0.25, alpha=0.5, ) +
  geom_hline(yintercept=0) +
  facet_grid(.~cluster) +
  geom_text(data = density_sum, aes(label = count,
                                    x = region, y = -90)) +
  theme(axis.text.x = element_text(angle = -30, hjust = 0.1),
        plot.title = element_text(hjust = 0.5),
        strip.background = element_rect(fill="lightblue")) +
  labs(title = "Democratic performance in the 2018 House elections, by region and density",
       x = "Density Index from CityLab",
       y = "Democratic Margin of Victory/Defeat") +
  theme(text = element_text(family = 'Fira Sans'),
        legend.position = "none")
fig <- ggplotly(p)

fig

Position Jitterdodge

Up to this point, we've subdivided points by making one category the x-axis, and facetting by the other. Another way is to make one category the x-axis, then use "position = dodge" so that the points are distinct rather than overlapping. Since we want points to be jittered and dodged, we can use geom_point with position_jitterdodge().

Make sure to specify the "group" variable: this graph specifies three potential grouping variables (cluster, region, cd_code), and position_jitterdodge can't tell which two to use unless specified. Further, you can use the ggplotly() function to specify what shows up on the tooltip.

library(plotly)

p <- ggplot(district_density,aes(x=cluster, y=dem_margin, colour=region, 
                                 district=cd_code, group=paste(cluster, region))) +
  geom_point(position=position_jitterdodge(), alpha=0.5) +
  geom_hline(yintercept=0) +
  theme(axis.text.x = element_text(angle = -30, hjust = 0.1),
        plot.title = element_text(hjust = 0.5)) +
  labs(title = "Democratic performance in the 2018 House elections, by region and density",
       x = "Density Index from CityLab",
       y = "Democratic Margin of Victory/Defeat") +
  theme(text = element_text(family = 'Fira Sans'))
fig <- ggplotly(fig, tooltip=c("district","y"))

fig

What About Dash?

Dash for R is an open-source framework for building analytical applications, with no Javascript required, and it is tightly integrated with the Plotly graphing library.

Learn about how to install Dash for R at https://dashr.plot.ly/installation.

Everywhere in this page that you see fig, you can display the same figure in a Dash for R application by passing it to the figure argument of the Graph component from the built-in dashCoreComponents package like this:

library(plotly)

fig <- plot_ly() 
# fig <- fig %>% add_trace( ... )
# fig <- fig %>% layout( ... ) 

library(dash)
library(dashCoreComponents)
library(dashHtmlComponents)

app <- Dash$new()
app$layout(
    htmlDiv(
        list(
            dccGraph(figure=fig) 
        )
     )
)

app$run_server(debug=TRUE, dev_tools_hot_reload=FALSE)