3D Isosurface Plots in Julia
How to make 3D Isosurface Plots in Julia with Plotly.
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With go.Isosurface, you can plot isosurface contours of a scalar field value, which is defined on x, y and z coordinates.
Basic Isosurface
In this first example, we plot the isocontours of values isomin=2 and isomax=6. In addition, portions of the sides of the coordinate domains for which the value is between isomin and isomax (named the caps) are colored. Please rotate the figure to visualize both the internal surfaces and the caps surfaces on the sides.
using PlotlyJS
trace = isosurface(
x=[0,0,0,0,1,1,1,1],
y=[1,0,1,0,1,0,1,0],
z=[1,1,0,0,1,1,0,0],
value=[1,2,3,4,5,6,7,8],
isomin=2,
isomax=6,
)
plot(trace)
Removing caps when visualizing isosurfaces
For a clearer visualization of internal surfaces, it is possible to remove the caps (color-coded surfaces on the sides of the visualization domain). Caps are visible by default.
using PlotlyJS
data = range(-5, stop=5, length=40)
X, Y, Z = mgrid(data, data, data)
values = X .* X .* 0.5 .+ Y .* Y .+ Z .* Z .* 2
plot(isosurface(
x=X[:],
y=Y[:],
z=Z[:],
value=values[:],
isomin=10,
isomax=40,
caps=attr(x_show=false, y_show=false)
))
Modifying the number of isosurfaces
using PlotlyJS
data = range(-5, stop=5, length=40)
X, Y, Z = mgrid(data, data, data)
# ellipsoid
values = X .* X .* 0.5 .+ Y .* Y .+ Z .* Z .* 2
plot(isosurface(
x=X[:],
y=Y[:],
z=Z[:],
value=values[:],
isomin=10,
isomax=50,
surface_count=5, # number of isosurfaces, 2 by default: only min and max
colorbar_nticks=5, # colorbar ticks correspond to isosurface values
caps=attr(x_show=false, y_show=false)
))
Changing the opacity of isosurfaces
using PlotlyJS
data = range(-5, stop=5, length=40)
X, Y, Z = mgrid(data, data, data)
# ellipsoid
values = X .* X .* 0.5 .+ Y .* Y .+ Z .* Z .* 2
plot(isosurface(
x=X[:],
y=Y[:],
z=Z[:],
value=values[:],
opacity=0.6,
isomin=10,
isomax=50,
surface_count=3,
caps=attr(x_show=false, y_show=false)
))
Isosurface with Additional Slices
Here we visualize slices parallel to the axes on top of isosurfaces. For a clearer visualization, the fill ratio of isosurfaces is decreased below 1 (completely filled).
using PlotlyJS
data = range(-5, stop=5, length=40)
X, Y, Z = mgrid(data, data, data)
# ellipsoid
values = X .* X .* 0.5 .+ Y .* Y .+ Z .* Z .* 2
plot(isosurface(
x=X[:],
y=Y[:],
z=Z[:],
value=values[:],
isomin=5,
isomax=50,
surface_fill=0.4,
caps=attr(x_show=false, y_show=false),
slices_z=attr(show=true, locations=[-1, -3,]),
slices_y=attr(show=true, locations=[0]),
))
Multiple Isosurfaces with Caps
data = range(-5, stop=5, length=40)
X, Y, Z = mgrid(data, data, data)
# ellipsoid
values = X .* X .* 0.5 .+ Y .* Y .+ Z .* Z .* 2
plot(isosurface(
x=X[:],
y=Y[:],
z=Z[:],
value=values[:],
isomin=30,
isomax=50,
surface=attr(count=3, fill=0.7, pattern="odd"),
caps=attr(x_show=true, y_show=true),
))
Changing the default colorscale of isosurfaces
<!– TODO: colorscale not changing –>
using PlotlyJS
data = range(-5, stop=5, length=40)
X, Y, Z = mgrid(data, data, data)
# ellipsoid
values = X .* X .* 0.5 .+ Y .* Y .+ Z .* Z .* 2
plot(isosurface(
x=X[:],
y=Y[:],
z=Z[:],
value=values[:],
colorscale=colors.RdBu_3,
isomin=10,
isomax=50,
surface_count=3,
caps=attr(x_show=false, y_show=false)
))
Customizing the layout and appearance of isosurface plots
using PlotlyJS
data = range(-5, stop=5, length=40)
X, Y, Z = mgrid(data, data, data)
# ellipsoid
values = X .* X .* 0.5 .+ Y .* Y .+ Z .* Z .* 2
trace = isosurface(
x=X[:],
y=Y[:],
z=Z[:],
value=values[:],
isomin=30,
isomax=50,
surface=attr(count=3, fill=0.7, pattern="odd"),
showscale=false, # remove colorbar
caps=attr(x_show=true, y_show=true),
)
layout = Layout(
margin=attr(t=0, l=0, b=0), # tight layout
scene_camera_eye=attr(x=1.86, y=0.61, z=0.98))
plot(trace, layout)
Reference
See https://plotly.com/julia/reference/isosurface/ for more information and chart attribute options!